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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17649135_17649171_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17649135 - 17649171
Intron Length:
37

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCATTGCCA
5'SS Class:
weak_major
3'SS Sequence:
TCTGACTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTGCTTTACAT
Flanking Amino Acid:
TNFLLCICSWCHQNKAFHHG
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.3
49.7
40.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
67.3
0.39
0.9
58.5
38.1
Minor 5ss
27
-2.6
4
36.4
42.6
Minor BPS
60
0.39
1.8
80.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027211
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034952
17649049 - 17651332
2284