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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17668140_17672032_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17668140 - 17672032
Intron Length:
3893

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCTAGCCTG
5'SS Class:
major
3'SS Sequence:
TTCCCTAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
TCTTCCCTAAAA
Flanking Amino Acid:
ICSVISSSQIPLFVTWKIG
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.5
57.8
46.6
Major BPS
73
0.57
1.2
74
41.2
Major PPT
67
0.38
1
63
36.1
Minor 5ss
29.9
-2.3
4
45.1
42.7
Minor BPS
66.1
0.5
1.8
77.61
38.8

Associated Gene:

Gene:
AMMECR1
Ensembl Gene ID:
ENSAPLG00000011562
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012036
17668111 - 17716554
48444