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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17672144_17703074_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17672144 - 17703074
Intron Length:
30931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
TTGTCTTCAACA
Flanking Amino Acid:
HSGLREYTLTSALKDSRFPP
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
77.5
0.62
0.9
73.9
35.5
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
71.8
0.68
1.5
79.46
37

Associated Gene:

Gene:
AMMECR1
Ensembl Gene ID:
ENSAPLG00000011562
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012036
17668111 - 17716554
48444