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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17713311_17716439_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17713311 - 17716439
Intron Length:
3129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAA
U12 Branch Point Sequence:
AGTTCTTGCATC
Flanking Amino Acid:
NEFRKTIKLTRYRSEKMTMS
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.9
36.9
Major BPS
60.1
0.25
1.3
61.7
43.1
Major PPT
80.2
0.68
0.8
73
37.4
Minor 5ss
50.2
0.01
2.5
68.8
42.2
Minor BPS
48.9
-0.1
1.9
62.17
37.5

Associated Gene:

Gene:
AMMECR1
Ensembl Gene ID:
ENSAPLG00000011562
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012036
17668111 - 17716554
48444