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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17729641_17730030_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17729641 - 17730030
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATATTGTTAATT
Flanking Amino Acid:
HFSILQILGLVTEVNLNNML
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
75.1
0.57
0.7
68.7
31.7
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
60.7
0.41
2
78.58
38

Associated Gene:

Gene:
TMEM164
Ensembl Gene ID:
ENSAPLG00000012154
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012663
17729434 - 17786556
57123