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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17730132_17739896_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17730132 - 17739896
Intron Length:
9765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ACTAACTGAATA
Flanking Amino Acid:
VVPIYLLRKGGIYTPEPLSN
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
69.7
43.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.5
0.71
0.9
86.5
24.9
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
50.2
0
1.7
60.69
39

Associated Gene:

Gene:
TMEM164
Ensembl Gene ID:
ENSAPLG00000012154
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012663
17729434 - 17786556
57123