About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17739976_17751824_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17739976 - 17751824
Intron Length:
11849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTCCTTATTC
Flanking Amino Acid:
LLFPVVNTRLLPFEMEIYYI
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
78.8
0.65
0.8
76.5
31.7
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
78.4
0.87
1.5
86.27
31.8

Associated Gene:

Gene:
TMEM164
Ensembl Gene ID:
ENSAPLG00000012154
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012663
17729434 - 17786556
57123