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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17751892_17752910_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17751892 - 17752910
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
TCTCTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCCCGTGAAA
Flanking Amino Acid:
PPCRVAMILFRLQMHMLNGA
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81
0.7
0.9
86.2
25.3
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
53.1
0.09
2.2
73.33
38.1

Associated Gene:

Gene:
TMEM164
Ensembl Gene ID:
ENSAPLG00000012154
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012663
17729434 - 17786556
57123