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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17816929_17819453_F

Intron Information:

Intron Rank:
2
Intron Class:
major_hybrid
Intron Phase:
5UTR
Intron Coordinates:
17816929 - 17819453
Intron Length:
2525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TACCAACGCAAAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTCTTACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
48.5
-0
1.1
44.7
35.1
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
72.4
0.7
1.5
81.19
34.3

Associated Gene:

Gene:
ACSL4
Ensembl Gene ID:
ENSAPLG00000012394
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012942
17808534 - 17833001
24468