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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17819694_17819972_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17819694 - 17819972
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTGCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTAATCACAG
Flanking Amino Acid:
MQPNGKVFKKLILGNYRWLS
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
73
0.52
0.9
64.9
36.3
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
39
-0.9
2.1
47.35
45

Associated Gene:

Gene:
ACSL4
Ensembl Gene ID:
ENSAPLG00000012394
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012942
17808534 - 17833001
24468