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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17820151_17821451_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17820151 - 17821451
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TTCCATGTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCCATGTAACA
Flanking Amino Acid:
ALACFKYNFPLVTLYATLGE
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.3
67.6
37.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
70.1
0.45
1
65.1
39.8
Minor 5ss
31.4
-2.1
3.2
42.2
38.9
Minor BPS
48.3
-0.1
2.1
65.36
41.2

Associated Gene:

Gene:
ACSL4
Ensembl Gene ID:
ENSAPLG00000012394
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012942
17808534 - 17833001
24468