About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17823299_17824449_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17823299 - 17824449
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTTCCTTTACT
Flanking Amino Acid:
TGQCERIPGLGPKDTYIGYL
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
35.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.2
0.66
0.8
74.4
35
Minor 5ss
33.3
-1.9
2.9
35.7
40.8
Minor BPS
79.5
1.01
1.5
92.33
36.7

Associated Gene:

Gene:
ACSL4
Ensembl Gene ID:
ENSAPLG00000012394
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012942
17808534 - 17833001
24468