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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17825499_17827934_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17825499 - 17827934
Intron Length:
2436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTGAACACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTCTTTTGAACA
Flanking Amino Acid:
LKPTLMAAVPEIMDRIYKNV
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
63.8
0.31
1
56.5
39.5
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
60.7
0.33
1.4
67
40.1

Associated Gene:

Gene:
ACSL4
Ensembl Gene ID:
ENSAPLG00000012394
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012942
17808534 - 17833001
24468