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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17829031_17829214_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17829031 - 17829214
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTTTTCCCTAAG
Flanking Amino Acid:
ETCGAGTITEVADYSTGRVG
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.1
35
Major BPS
54
0.1
1
59.7
32.6
Major PPT
78.3
0.64
0.9
83.9
24.8
Minor 5ss
33.7
-1.9
2.9
41.9
44.8
Minor BPS
42.9
-0.7
2.2
57.52
43.5

Associated Gene:

Gene:
ACSL4
Ensembl Gene ID:
ENSAPLG00000012394
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012942
17808534 - 17833001
24468