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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17829290_17829516_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17829290 - 17829516
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTGAAAATAATA
Flanking Amino Acid:
CEIRLRDWQEGGYTNRDKPN
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
86.9
30.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
88.9
0.88
0.7
81
36.6
Minor 5ss
39.9
-1.1
3.1
56.9
47.4
Minor BPS
42.1
-0.6
1.9
51.31
40

Associated Gene:

Gene:
ACSL4
Ensembl Gene ID:
ENSAPLG00000012394
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012942
17808534 - 17833001
24468