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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17829709_17830259_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17829709 - 17830259
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGGCCTC
5'SS Class:
major
3'SS Sequence:
CTTCAACTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAA
U12 Branch Point Sequence:
TTCCCTTCAACT
Flanking Amino Acid:
FHPDGCLQIIDRKKDLVKLQ
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.4
1.3
59.2
45.8
Major BPS
65.8
0.39
1.1
69.2
36.3
Major PPT
67.9
0.4
0.9
58.8
36.9
Minor 5ss
37.4
-1.4
3.3
50.8
45.8
Minor BPS
66.8
0.61
1.5
81.65
39.9

Associated Gene:

Gene:
ACSL4
Ensembl Gene ID:
ENSAPLG00000012394
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012942
17808534 - 17833001
24468