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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17830375_17831029_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17830375 - 17831029
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
CATCCTGTGGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCCTTCCTT
Flanking Amino Acid:
LIDNICAYAKSDQSYVISFV
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
61.4
0.26
1
57.6
38.2
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
48.3
-0
3.6
87.41
38.9

Associated Gene:

Gene:
ACSL4
Ensembl Gene ID:
ENSAPLG00000012394
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012942
17808534 - 17833001
24468