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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17831188_17832770_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17831188 - 17832770
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTGTCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTGACAACATT
Flanking Amino Acid:
LREIKEVADKMKLERFEIPI
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
84
0.77
0.8
78.1
30.7
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
40.1
-0.7
2.4
65.28
45.5

Associated Gene:

Gene:
ACSL4
Ensembl Gene ID:
ENSAPLG00000012394
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012942
17808534 - 17833001
24468