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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17838685_17840002_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17838685 - 17840002
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GAACTGCAGCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CGGCCATGAACT
Flanking Amino Acid:
LGQESWSAGLARRLQALLGS
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
1
81.6
35.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
41
-0.5
1.7
32.3
41.1
Minor 5ss
26.1
-2.7
4.1
37
41.8
Minor BPS
49
0.01
1.8
64.76
44.8

Associated Gene:

Gene:
KCNE5
Ensembl Gene ID:
ENSAPLG00000012393
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012892
17838643 - 17840296
1654