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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17848977_17850080_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17848977 - 17850080
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAGA
5'SS Class:
major
3'SS Sequence:
CGTAACCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTTCCAAATA
Flanking Amino Acid:
MDKRRRVLTRLYLDKA
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.6
41.3
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
64.2
0.32
0.9
58.7
37.9
Minor 5ss
40.7
-1
2.5
42.3
44.5
Minor BPS
56.6
0.2
2
75.29
36.6

Associated Gene:

Gene:
NXT2
Ensembl Gene ID:
ENSAPLG00000023390
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026128
17847156 - 17898793
51638