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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17850168_17860910_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17850168 - 17860910
Intron Length:
10743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GATTTTGTATGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
41.9
-0.5
2.3
60.65
43.5

Associated Gene:

Gene:
NXT2
Ensembl Gene ID:
ENSAPLG00000023390
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026128
17847156 - 17898793
51638