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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17861026_17898637_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17861026 - 17898637
Intron Length:
37612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTTGTGTATAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
74.9
38.1
Major BPS
75
0.62
1
65.3
41.5
Major PPT
78.7
0.65
1
72.9
41.4
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
42.6
-0.5
2.5
62.82
43.1

Associated Gene:

Gene:
NXT2
Ensembl Gene ID:
ENSAPLG00000023390
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026128
17847156 - 17898793
51638