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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17957714_17958040_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17957714 - 17958040
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAAAT
5'SS Class:
major
3'SS Sequence:
TCTTATTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGTATCT
Flanking Amino Acid:
GNERAHGQDLGTAGSCLRRF
Intron Amino Acid Position:
1351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
76.8
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.9
0.74
0.7
81.5
30.1
Minor 5ss
29.3
-2.4
2.9
32.2
42.1
Minor BPS
49.4
0.03
2.4
80.49
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020770
17954757 - 18042249
87493
ENSAPLT00000013437
17954757 - 18000691
45935
ENSAPLT00000027572
17954757 - 18000691
45935