Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17960726_17961112_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17960726 - 17961112

Intron Length:

387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGACAA

5'SS Class:

strong_major

3'SS Sequence:

CTGTTCTGTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAATAAC

U12 Branch Point Sequence:

ATAACGTGAAGC

Flanking Amino Acid:

KGDQGPPGRQGDPGRPGLNG

Intron Amino Acid Position:

1156

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

67.8

39.3

Major BPS

52.4

0.06

1.2

37.3

Major PPT

78.3

0.64

0.9

76.7

37.4

Minor 5ss

29.9

-2.3

3.3

38.1

46.8

Minor BPS

43.2

-0.5

2.3

55.52

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012868

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027572

17954757 - 18000691

45935

ENSAPLT00000020770

17954757 - 18042249

87493

ENSAPLT00000013437

17954757 - 18000691

45935