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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17961247_17966682_R

Intron Information:

Intron Rank:
34
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17961247 - 17966682
Intron Length:
5436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CCACAATGTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGTTCCACAATG
Flanking Amino Acid:
PGPPGVPGRPGSPGPEGPRG
Intron Amino Acid Position:
1111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
50.6
0.01
1.1
52.4
40.5
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
54.9
0.02
1.9
65.83
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013437
17954757 - 18000691
45935