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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17962578_17964852_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17962578 - 17964852
Intron Length:
2275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCCCC
5'SS Class:
major
3'SS Sequence:
CTGATCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTTTGGTGAACT
Flanking Amino Acid:
PGVPGRPGPSGPPGSPGPEG
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
61.8
43
Major BPS
79
0.72
1
69
38.9
Major PPT
75.6
0.58
0.9
65.8
40.8
Minor 5ss
35.5
-1.6
2.8
43.9
43.4
Minor BPS
48.4
-0
2.5
76.42
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020770
17954757 - 18042249
87493