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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17962578_17966682_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17962578 - 17966682
Intron Length:
4105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGATCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTTTGGTGAACT
Flanking Amino Acid:
PGPPGVPGRPGPPGSPGPEG
Intron Amino Acid Position:
1111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
79
0.72
1
69
38.9
Major PPT
75.6
0.58
0.9
65.8
40.8
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
48.4
-0
2.5
76.42
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027572
17954757 - 18000691
45935