About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17967741_17968316_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17967741 - 17968316
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCTGT
5'SS Class:
major
3'SS Sequence:
TGTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GCGTTATTAAAT
Flanking Amino Acid:
PGPAGQKGEPGLPGFGRPGP
Intron Amino Acid Position:
1032

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
70.9
41.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
87
0.83
0.7
84.7
30.2
Minor 5ss
41.9
-0.9
2.9
57.2
46.9
Minor BPS
52.6
0.16
1.7
66.73
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013437
17954757 - 18000691
45935
ENSAPLT00000027572
17954757 - 18000691
45935
ENSAPLT00000020770
17954757 - 18042249
87493