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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1796960_1797568_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1796960 - 1797568
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAAAG
5'SS Class:
major
3'SS Sequence:
TGTGTTTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
ATGATGGTAACG
Flanking Amino Acid:
IRSKLTPVKQDHSPDGPLTN
Intron Amino Acid Position:
1363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
67.7
39.3
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
70.1
0.45
1
69.4
41.7
Minor 5ss
26
-2.8
3
29.9
43.3
Minor BPS
41
-0.8
2.5
49.5
44.6

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010014
1796175 - 1835355
39181
ENSAPLT00000034186
1796175 - 1833250
37076
ENSAPLT00000023756
1796175 - 1835355
39181