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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17970449_17973082_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17970449 - 17973082
Intron Length:
2634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TAATATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTGCTTAATA
Flanking Amino Acid:
IGIPGLPGPKGDLGLPGYPG
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.8
0.65
0.9
69.9
45
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
70.6
0.64
1.7
78.78
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020770
17954757 - 18042249
87493
ENSAPLT00000013437
17954757 - 18000691
45935
ENSAPLT00000027572
17954757 - 18000691
45935