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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17976525_17977522_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17976525 - 17977522
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTACCTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
GTTGTCTTACCT
Flanking Amino Acid:
PGRNGLPGSKGNNGLPGPPG
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
75.6
0.58
0.8
70.6
30.2
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
63
0.49
1.7
79.89
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027572
17954757 - 18000691
45935
ENSAPLT00000020770
17954757 - 18042249
87493
ENSAPLT00000013437
17954757 - 18000691
45935