Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17977613_17978474_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17977613 - 17978474

Intron Length:

862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TCAATGTGTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

GTGTTCTGAATG

Flanking Amino Acid:

PGRDGIPGFPGAKGEMGVMG

Intron Amino Acid Position:

740

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.9

1.06

0.6

14.8

Major BPS

82.1

0.8

71.6

36.4

Major PPT

68.3

0.41

1.1

65.2

45.2

Minor 5ss

40.7

-1

57.8

46.8

Minor BPS

58.8

0.14

1.5

60.5

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012868

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027572

17954757 - 18000691

45935

ENSAPLT00000020770

17954757 - 18042249

87493

ENSAPLT00000013437

17954757 - 18000691

45935