About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17982313_17982959_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17982313 - 17982959
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
CATGTTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TCTAACTAAAGC
Flanking Amino Acid:
AGFDGTPGPKGDPGPSGPPG
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
76.5
0.6
0.8
73.8
36.5
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
46.4
-0.2
2.1
59.68
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027572
17954757 - 18000691
45935
ENSAPLT00000020770
17954757 - 18042249
87493
ENSAPLT00000013437
17954757 - 18000691
45935