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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1798338_1798920_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1798338 - 1798920
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACGTAA
5'SS Class:
major
3'SS Sequence:
TTTGTATCGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACAATTTTATCT
Flanking Amino Acid:
SSSPSTSRASSPKGKQKQMK
Intron Amino Acid Position:
1277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
71.9
36.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75
0.56
1
74.5
40.4
Minor 5ss
41.6
-0.9
3.2
55.3
48.9
Minor BPS
49.7
0.05
1.6
63.12
41.4

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034186
1796175 - 1833250
37076
ENSAPLT00000023756
1796175 - 1835355
39181
ENSAPLT00000010014
1796175 - 1835355
39181