About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17984364_17985012_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17984364 - 17985012
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
CTCCCTTTGACT
Flanking Amino Acid:
SGRPGPPGVPGPKGEPGQTI
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.7
34.9
Major BPS
66.4
0.41
1
61.3
37
Major PPT
82.9
0.74
0.8
80.8
31.3
Minor 5ss
39.7
-1.2
2.8
46.1
43.6
Minor BPS
67
0.62
1.3
76.19
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020770
17954757 - 18042249
87493
ENSAPLT00000013437
17954757 - 18000691
45935
ENSAPLT00000027572
17954757 - 18000691
45935