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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17985824_17986029_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17985824 - 17986029
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
CTTTTCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TTTTCTTTTCCT
Flanking Amino Acid:
PGLTGLVGPPGFPGPPGAPG
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.3
40.5
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
86.4
0.82
0.7
84.7
23
Minor 5ss
36.6
-1.5
3.4
54.8
43.5
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013437
17954757 - 18000691
45935
ENSAPLT00000027572
17954757 - 18000691
45935
ENSAPLT00000020770
17954757 - 18042249
87493