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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1799085_1801020_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1799085 - 1801020
Intron Length:
1936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TTTCTCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTTTAATAATT
Flanking Amino Acid:
KAYTPNKKSRIYSMTLRLSA
Intron Amino Acid Position:
1223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.6
40.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86.1
0.81
0.8
78.1
34.9
Minor 5ss
37.2
-1.5
3
46.8
42.6
Minor BPS
50
0.08
1.9
70.4
40.6

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010014
1796175 - 1835355
39181
ENSAPLT00000034186
1796175 - 1833250
37076
ENSAPLT00000023756
1796175 - 1835355
39181