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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17991677_17991850_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17991677 - 17991850
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGCTCTTAATT
Flanking Amino Acid:
NGAPGRDGEKGEKGDTGPPG
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80
0.68
0.8
74.8
34.4
Minor 5ss
49.3
-0
2.5
64.8
46.5
Minor BPS
71.3
0.75
1.2
79.35
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027572
17954757 - 18000691
45935
ENSAPLT00000013437
17954757 - 18000691
45935