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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17992050_17994125_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17992050 - 17994125
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TATGTCTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTCAATG
Flanking Amino Acid:
KGEQGEPGKRGKPGKDGEPG
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.5
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.8
0.49
1.1
72
37.9
Minor 5ss
38.7
-1.3
2.8
48
41.7
Minor BPS
55.8
0.04
1.6
63.61
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027572
17954757 - 18000691
45935
ENSAPLT00000013437
17954757 - 18000691
45935