Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17994183_17994288_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17994183 - 17994288

Intron Length:

106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTGAGTAGT

5'SS Class:

major

3'SS Sequence:

TTTGTGTGTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAGAT

U12 Branch Point Sequence:

CTCAGTTTAAGA

Flanking Amino Acid:

PGLPGPQGPPGLPGGVKGEK

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.1

71.2

40.3

Major BPS

67.4

0.43

1.1

63.4

42.8

Major PPT

77.1

0.61

69.2

46.1

Minor 5ss

34.9

-1.7

2.9

52.3

44.3

Minor BPS

-0.3

2.1

54.82

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012868

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013437

17954757 - 18000691

45935

ENSAPLT00000027572

17954757 - 18000691

45935