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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17994343_17996575_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17994343 - 17996575
Intron Length:
2233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCATGCTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCCTCTTTTACT
Flanking Amino Acid:
NDIEFQKGDQGIPGDPGPPG
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
69.2
0.43
1.1
64.5
41.3
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
67.3
0.63
1.6
79.47
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012868
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027572
17954757 - 18000691
45935
ENSAPLT00000013437
17954757 - 18000691
45935