Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17996975_17997472_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17996975 - 17997472

Intron Length:

498

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGCTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTAATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

VGPPGPPGLTGPPGPPGLPG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

73.5

38.6

Major BPS

69.2

0.48

1.3

71.9

Major PPT

86.6

0.82

0.7

85.3

27.9

Minor 5ss

48.9

-0.1

2.8

68.8

42.1

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012868

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027572

17954757 - 18000691

45935

ENSAPLT00000013437

17954757 - 18000691

45935