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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1801174_1801453_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1801174 - 1801453
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CATGCTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCTTTATTATTT
Flanking Amino Acid:
RQPVDLFSYPDYRDIVDTPM
Intron Amino Acid Position:
1172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
70.1
35.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
76.4
0.59
0.9
68.7
37
Minor 5ss
33.5
-1.9
2.7
44.7
42.7
Minor BPS
56.2
0.27
1.8
76.22
41

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034186
1796175 - 1833250
37076
ENSAPLT00000023756
1796175 - 1835355
39181
ENSAPLT00000010014
1796175 - 1835355
39181