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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1801595_1802125_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1801595 - 1802125
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATATTCTGAAAG
Flanking Amino Acid:
APGTSSGKRRVRRRIKRQPM
Intron Amino Acid Position:
1125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
73
33.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
87
0.83
0.7
81.4
30.6
Minor 5ss
30.9
-2.2
2.6
29.7
36.6
Minor BPS
55.8
0.05
1.6
60.98
40.2

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034186
1796175 - 1833250
37076
ENSAPLT00000023756
1796175 - 1835355
39181
ENSAPLT00000010014
1796175 - 1835355
39181