About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18043083_18087104_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18043083 - 18087104
Intron Length:
44022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
VCLGMELASGGGKKSYTGPC
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.3
39.5
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
31.6
-2.1
3.1
31.9
42.5
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220