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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18087189_18130391_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18087189 - 18130391
Intron Length:
43203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTGACTTACTT
Flanking Amino Acid:
CKCFPEKGARGRPGPIGIQG
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
73.7
0.53
1
74.7
40
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
54.2
0.21
1.9
75.01
42.1

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220