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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1808912_1809263_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1808912 - 1809263
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGCATT
5'SS Class:
major
3'SS Sequence:
TAATATATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
GTGCTCTCAATA
Flanking Amino Acid:
RRKLKQPRKKKPSGLLSMEG
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
73.9
42.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
70.8
0.47
1
67.7
42.7
Minor 5ss
40.3
-1.1
3.2
57.7
46.7
Minor BPS
53.9
0.12
1.5
61.53
38.7

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034186
1796175 - 1833250
37076
ENSAPLT00000023756
1796175 - 1835355
39181
ENSAPLT00000010014
1796175 - 1835355
39181