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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1811388_1812017_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1811388 - 1812017
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGACAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TGTCCTGTGACA
Flanking Amino Acid:
KRKPSHTLQRNDYQPGSGRS
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
37.5
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
50.1
0
1.1
49.5
37.2
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
51.8
0.05
2
68.5
37.8

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034186
1796175 - 1833250
37076
ENSAPLT00000023756
1796175 - 1835355
39181
ENSAPLT00000010014
1796175 - 1835355
39181