Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18130527_18131626_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18130527 - 18131626

Intron Length:

1100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTTCA

5'SS Class:

major

3'SS Sequence:

TTTTTTTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAACAT

U12 Branch Point Sequence:

AGAAAAATAACA

Flanking Amino Acid:

PGPPGHKGIKGSMGVPGFQG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

72.2

33.2

Major BPS

62.2

0.3

1.1

69.4

35.8

Major PPT

1.06

0.5

96.7

11.4

Minor 5ss

46.6

-0.3

2.4

59.8

44.6

Minor BPS

42.8

-0.5

1.9

52.53

37.7

Associated Gene:

Gene:

COL4A6

Ensembl Gene ID:

ENSAPLG00000013356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014088

18042267 - 18177486

135220