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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18131672_18137030_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18131672 - 18137030
Intron Length:
5359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
CCCTTTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTCCCTTTTACA
Flanking Amino Acid:
PGFQGINGIPGHPGQSGPRG
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
78
32.5
Major BPS
74.2
0.6
1
67
39.4
Major PPT
75.6
0.58
0.8
71.3
32.1
Minor 5ss
42.9
-0.8
3
63.8
41.6
Minor BPS
63
0.4
1.6
72.67
39.1

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220